Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs16835437 | chr1:153531282 | C/G | 3.79E-12 | 407 | 7.32 | 17.73 | 15.18 | KM Plot |
| LGG | rs16836789 | chr2:202047833 | C/T | 1.7E-6 | 407 | 15.2 | 15.63 | 4.45 | KM Plot |
| LGG | rs16836813 | chr2:202052754 | C/T | 9.86E-6 | 407 | 15.33 | 15.37 | 2.07 | KM Plot |
| LGG | rs16858733 | chr1:161697977 | G/C | 1.04E-5 | 398 | 14.9 | 19.03 | 13.97 | KM Plot |
| LGG | rs16875317 | chr6:46931129 | A/G | 1.6E-5 | 405 | 15.13 | 16.55 | 12.5 | KM Plot |
| LGG | rs16883819 | chr6:35997768 | C/T | 1.03E-9 | 405 | 15.63 | 15.18 | 6.15 | KM Plot |
| LGG | rs16883860 | chr6:36002462 | C/T | 9.4E-10 | 407 | 6.15 | 14.95 | 15.7 | KM Plot |
| LGG | rs16883989 | chr6:36010958 | A/G | 1.0E-9 | 406 | 15.67 | 14.95 | 6.15 | KM Plot |
| LGG | rs16884628 | chr6:36057968 | C/T | 9.31E-10 | 407 | 15.63 | 15.15 | 6.15 | KM Plot |
| LGG | rs16884660 | chr6:36060211 | G/A | 9.31E-10 | 407 | 15.63 | 15.15 | 6.15 | KM Plot |
| LGG | rs16884694 | chr6:36063162 | G/A | 1.03E-9 | 406 | 15.7 | 15.17 | 6.15 | KM Plot |
| LGG | rs16884857 | chr6:36070227 | G/T | 9.92E-10 | 407 | 15.63 | 15.18 | 6.15 | KM Plot |
| LGG | rs16884906 | chr6:36070699 | A/G | 9.31E-10 | 407 | 15.63 | 15.15 | 6.15 | KM Plot |
| LGG | rs16884919 | chr6:36071517 | A/G | 9.63E-10 | 407 | 6.15 | 16.47 | 15.37 | KM Plot |
| LGG | rs16923645 | chr9:23714639 | C/T | 0.000106 | 407 | 15.78 | 8.3 | 0 | KM Plot |